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# Change pip's cache directory to be inside the project directory since we can
# only cache local items.
SREGISTRY_URL : "https://cloud.sylabs.io/"
SREGISTRY_USERNAME : nyhuma
- apt-get update -y
# graphics
- apt-get install libgl1-mesa-glx xvfb -y
# gmsh
- apt-get install libglu1-mesa libxcursor1 libxinerama1 -y
# repository
- python -m pip install --upgrade pip
- python --version # For debugging
- pip install virtualenv
- virtualenv venv
- source venv/bin/activate
stages: # List of stages for jobs, and their order of execution
cache:
paths:
- .cache/pip
- venv/
- /var/cache/apt/archives/
test: # This job runs in the build stage, which runs first.
stage: test
<<: *environment # It can run at the same time as unit-test-job (in parallel).
script:
- pip install flake8
- flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude='venv/'
- flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics --exclude='venv/'
script:
- apt-get install pandoc -y
- apt-get install texlive-xetex texlive-fonts-recommended texlive-plain-generic -y
- pip install nbconvert ipykernel
- pip install . #todo: this should not be necessary
- cd examples
# Loop through .ipynb files in the examples directory
- for file in *.ipynb; do echo "Converting $file to PDF..."; jupyter nbconvert --execute "$file" --to pdf; done
script:
- pip install .
- pip install -r requirements_dev.txt
- python -m pytest --cov=ntrfc tests
- coverage xml
coverage: '/TOTAL.*\s+(\d+\%)/'
artifacts:
paths:
- coverage.xml
script:
- pip install sphinx sphinx-rtd-theme
pages:
stage: deploy
<<: *environment
script:
- mkdir .public
- cp -r * .public
- mv .public public
artifacts:
paths:
- public
name: quay.io/singularity/singularity:v3.7.0
entrypoint: [""]
- echo $SYLABSTOKEN
- singularity remote login --username $SREGISTRY_USERNAME --tokenfile $SYLABSTOKEN
- singularity build --remote library://nyhuma/ntrflows/ntr.sif:latest singularitybuild/ntrfc_container.def
script:
- pip install twine
- python setup.py sdist bdist_wheel
- twine upload --username $PYPI_USERNAME --password $PYPI_PASSWORD --verbose dist/*
only: