singularity remote build in ci/cd

.gitlab-ci.yml

@@ -5,6 +5,9 @@ image: python:3.10
 variables:
     PIP_CACHE_DIR: "$CI_PROJECT_DIR/.cache/pip"
     LIBGL_ALWAYS_INDIRECT : 0
+    SREGISTRY_TOKEN : "singularitybuild/sylabstoken"
+    SREGISTRY_URL : "https://cloud.sylabs.io/"
+    SREGISTRY_USERNAME : nyhuma
 
 # Pip's cache doesn't store the python packages
 # https://pip.pypa.io/en/stable/topics/caching/
@@ -16,7 +19,8 @@ cache:
         - .cache/pip
         - venv/
 
-before_script:
+.before_script_template: &build_test
+ before_script:
     - apt-get update -y && apt-get install libgl1-mesa-glx xvfb -y
     - python -m pip install --upgrade pip
     - python --version  # For debugging
@@ -25,26 +29,37 @@ before_script:
     - source venv/bin/activate
 
 stages: # List of stages for jobs, and their order of execution
+    - build
     - test
-#  - deploy
+    - quality
+    - deploy
+
+build:
+    stage: build  
+    <<: *build_test
+    script:
+        - pip install .
 
 
 test: # This job runs in the build stage, which runs first.
     stage: test
+    <<: *build_test
     script:
         - pip install .
         - pip install -r requirements_dev.txt
         - pytest tests/.
 
 lint-test-job: # This job also runs in the test stage.
-    stage: test    # It can run at the same time as unit-test-job (in parallel).
+    stage: quality
+    <<: *build_test    # It can run at the same time as unit-test-job (in parallel).
     script:
         - pip install flake8
         - flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude='venv/'
         - flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics   --exclude='venv/'
 
 coverage:
-  stage: test
+  stage: quality
+  <<: *build_test
   script:
         - pip install .
         - pip install -r requirements_dev.txt
@@ -57,9 +72,17 @@ coverage:
     when: always
 
 
-#deploy-job:      # This job runs in the deploy stage.
-#  stage: deploy  # It only runs when *both* jobs in the test stage complete successfully.
-#  script:
-#    - echo "Deploying application..."
-#    - echo "Application successfully deployed."
+build-singularity:
+  image: 
+    name: quay.io/singularity/singularity:v3.7.0
+    entrypoint: [""]
+  stage: deploy 
+  only:
+    - tags
+    - master
+  script:
+    - singularity remote login --username $SREGISTRY_USERNAME --tokenfile $SREGISTRY_TOKEN
+    - singularity build --remote library://nyhuma/ntrflows/ntr.sif:latest singularitybuild/ntrfc_container.def
+  interruptible: true
+
 

singularitybuild/sylabstoken

+eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJodHRwczovL2F1dGguc3lsYWJzLmlvL3Rva2VuIiwic3ViIjoiNjI2YjBmMGM0MjhiN2E2MTg5YjEyYWI2IiwiZXhwIjoxNjcyNTgzMjQzLCJpYXQiOjE2Njk5OTEyNDMsImp0aSI6IjYzOGEwYjRiZWE2ZWE2MDM4YTQ0NjFmNSJ9.LHrRUPUbNanrhxEsM0Cb46l5K4y_p4cA3iWiN9vIi89h5ukNUOCppkeZnV83xyPNxBmEzPPC4lFnCugXe2XCIrMaqrG38RFGBDQOrB_aQnbFVfdBozzNoczwxZH5_JUK_JPsebqd2-Xv-in3T3pxJnW9MgbU5t5TONeJezARtXMzsTt3JeYrrUdWBhovdX_JiP4ZOUP_7ujeioBqgAuCeyH79c7sLJHzS-xS41DEzmWt75ZyagLuY0AqrBI4BjLJCz29wOLqvpIuSPmRZEQ63UasUZBq23FgzTZujQoSBgFtYN3w7yB7Em5WkJzLAtdr1EQ-t8LmT_m7m_RSQOBbWw